Publications
Information about journal articles, updated at 22-12-2024, from platform CIÊNCIAVITAE.
Raw meat-based diet for pets: a neglected source of human exposure to Salmonella and mcr-carrying Escherichia coli in Europe
Ribeiro-Almeida, M; Mourão, Joana; Magalhães, Mafalda; Freitas, Ana R; Novais, Carla; Peixe, L; Antunes, Patrícia, Eurosurveillance. 2024. in press Eurosurveillance
Decoding Klebsiella pneumoniae in Poultry Chain: Unveiling Genetic Landscape, Antibiotic Resistance, and Biocide Tolerance in Non-Clinical Reservoirs
Mourão, Joana; Magalhães, Mafalda; Ribeiro-Almeida, M; Rebelo, Andreia; Novais, Carla; Peixe, L; Novais, Ângela; Antunes, Patrícia, Frontiers in Microbiology. 2024. https://doi.org/10.3389/fmicb.2024.1365011 . https://doi.org/10.3389/fmicb.2024.1365011 . in press Frontiers in Microbiology
POSEIDON: Peptidic Objects SEquence-based Interaction with cellular DOmaiNs: a new database and predictor
Preto, A.J.; Caniceiro, Ana B.; Duarte, Francisco; Fernandes, Hugo; Ferreira, Lino; Mourão, Joana; Moreira, Irina S, Journal of Cheminformatics. 1. 16. 2024. http://dx.doi.org/10.1186/s13321-024-00810-7 . 10.1186/s13321-024-00810-7 . published Journal of Cheminformatics
From Farm to Fork: Persistence of Clinically Relevant Multidrug-Resistant and Copper-Tolerant Klebsiella pneumoniae Long after Colistin Withdrawal in Poultry Production
Mourão, Joana; Ribeiro-Almeida, M; Novais, Carla; Magalhães, Mafalda; Rebelo, Andreia; Ribeiro, Sofia; Peixe, L; Novais, Ângela; Antunes, Patrícia, Microbiology Spectrum. 4. 11. 2023. http://dx.doi.org/10.1128/spectrum.01386-23 . 10.1128/spectrum.01386-23 . published Microbiology Spectrum
Enterococcus spp. from chicken meat collected 20 years apart overcome multiple stresses occurring in the poultry production chain: Antibiotics, copper and acids
Rebelo, Andreia; Duarte, Bárbara; Ferreira, Carolina; Mourão, Joana; Ribeiro, Sofia; Freitas, Ana R.; Coque, Teresa M.; et al, International Journal of Food Microbiology. 384. 2023. http://dx.doi.org/10.1016/j.ijfoodmicro.2022.109981 . 10.1016/j.ijfoodmicro.2022.109981 . published International Journal of Food Microbiology
SYNPRED: prediction of drug combination effects in cancer using different synergy metrics and ensemble learning
Preto, A.J.; Matos-Filipe, Pedro; Mourão, Joana; Moreira, Irina S, GigaScience. 11. 2022. http://dx.doi.org/10.1093/gigascience/giac087 . 10.1093/gigascience/giac087 . published GigaScience
High diversity of pathogenic Escherichia coli clones carrying mcr-1 among gulls underlines the need for strategies at the environment-livestock-human interface
Ribeiro-Almeida, M; Mourão, Joana; Novais, Ângela; Pereira, Sofia; Freitas-Silva, Joana; Ribeiro, Sofia; Martins da Costa, Paulo; Peixe, L; Antunes, Patrícia, Environmental Microbiology. 4702 - 4713. 10. 24. 2022. http://dx.doi.org/10.1111/1462-2920.16111 . 10.1111/1462-2920.16111 . published Environmental Microbiology
From farm to fork: Colistin voluntary withdrawal in Portuguese farms reflected in decreasing occurrence of mcr-1-carrying Enterobacteriaceae from chicken meat
Ribeiro, Sofia; Mourão, Joana; Novais, Ângela; Campos, Joana; Peixe, L; Antunes, Patrícia, Environmental Microbiology. 7563 - 7577. 12. 23. 2021. http://dx.doi.org/10.1111/1462-2920.15689 . 10.1111/1462-2920.15689 . published Environmental Microbiology
Diversity of metal and antibiotic resistance genes in Enterococcus spp. from the last century reflects multiple pollution and genetic exchange among phyla from overlapping ecosystems
Rebelo, Andreia; Mourão, Joana; Freitas, Ana R.; Duarte, Bárbara; Silveira, Eduarda; Sanchez-Valenzuela, Antonio; Almeida, Agostinho; et al, Science of The Total Environment. 787. 2021. http://dx.doi.org/10.1016/j.scitotenv.2021.147548 . 10.1016/j.scitotenv.2021.147548 . published Science of The Total Environment
MicroMundo@UPorto: an experimental microbiology project fostering student's antimicrobial resistance awareness and personal and social development
Antunes, Patrícia; Novais, Carla; Novais, Ângela; Grosso, Filipa; Ribeiro, Teresa G; Mourão, Joana; Perovic, Svetlana; et al, FEMS Microbiology Letters. 4. 368. 2021. http://dx.doi.org/10.1093/femsle/fnab016 . 10.1093/femsle/fnab016 . published FEMS Microbiology Letters
MENSAdb: a thorough structural analysis of membrane protein dimers
Matos-Filipe, Pedro; Preto, A.J.; Koukos, Panagiotis I; Mourão, Joana; Bonvin, Alexandre M J J; Moreira, Irina S, Database. 2021. 2021. http://dx.doi.org/10.1093/database/baab013 . 10.1093/database/baab013 . published Database
Atypical Non-H2S-Producing Monophasic Salmonella Typhimurium ST3478 Strains from Chicken Meat at Processing Stage Are Adapted to Diverse Stresses
Mourão, Joana; Rebelo, Andreia; Ribeiro, Sofia; Peixe, L; Novais, Carla; Antunes, Patrícia, Pathogens. 9. 9. 2020. http://dx.doi.org/10.3390/pathogens9090701 . 10.3390/pathogens9090701 . published Pathogens
Comprehensive genome data analysis establishes a triple whammy of carbapenemases, ICEs and multiple clinically relevant bacteria
Botelho, João; Mourão, Joana; Roberts, Adam P.; Peixe, L, Microbial Genomics. 10. 6. 2020. http://dx.doi.org/10.1099/mgen.0.000424 . 10.1099/mgen.0.000424 . published Microbial Genomics
Tolerance to arsenic contaminant among multidrug-resistant and copper-tolerant Salmonella successful clones is associated with diverse ars operons and genetic contexts
Mourão, Joana; Rebelo, Andreia; Ribeiro, Sofia; Peixe, L; Novais, Carla; Antunes, Patrícia, Environmental Microbiology. 2829 - 2842. 7. 22. 2020. http://dx.doi.org/10.1111/1462-2920.15016 . 10.1111/1462-2920.15016 . published Environmental Microbiology
Non-typhoidal Salmonella in the Pig Production Chain: A Comprehensive Analysis of Its Impact on Human Health
Campos, Joana; Mourão, Joana; Peixe, Luísa; Antunes, Patrícia, Pathogens. 1. 8. 2019. http://dx.doi.org/10.3390/pathogens8010019 . 10.3390/pathogens8010019 . published Pathogens
Inflow water is a major source of trout farming contamination with Salmonella and multidrug resistant bacteria
Antunes, Patrícia; Campos, Joana; Mourão, Joana; Pereira, Joana; Novais, Carla; Peixe, Luísa, Science of The Total Environment. 1163 - 1171. 642. 2018. http://www.sciencedirect.com/science/article/pii/S0048969718322198 . https://doi.org/10.1016/j.scitotenv.2018.06.143 . published Science of The Total Environment
Occurrence of mcr-1 in Escherichia coli from rabbits of intensive farming
Freitas-Silva, Joana; Inácio, Ângela S.; Mourão, Joana; Antunes, Patrícia; Mendes, Ângelo; de Carvalho, André Pinto; Vasconcelos, Vitor; Peixe, Luísa; da Costa, Paulo Martins, Veterinary Microbiology. 78 - 81. 227. 2018. http://dx.doi.org/10.1016/j.vetmic.2018.10.020 . 10.1016/j.vetmic.2018.10.020 . published Veterinary Microbiology
Discrimination of non-typhoid Salmonella serogroups and serotypes by Fourier Transform Infrared Spectroscopy: A comprehensive analysis
Campos, Joana; Sousa, Clara; Mourão, Joana; Lopes, João; Antunes, Patrícia; Peixe, Luísa, International Journal of Food Microbiology. 34 - 41. 285. 2018. http://dx.doi.org/10.1016/j.ijfoodmicro.2018.07.005 . 10.1016/j.ijfoodmicro.2018.07.005 . published International Journal of Food Microbiology
Imported poultry meat as a source of extended-spectrum cephalosporin-resistant CMY-2-producing Salmonella Heidelberg and Salmonella Minnesota in the European Union, 2014–2015
Campos, Joana; Mourão, Joana; Silveira, Leonor; Saraiva, Margarida; Correia, Cristina Belo; Maçãs, Ana Paula; Peixe, Luísa; Antunes, Patrícia, International Journal of Antimicrobial Agents. 151 - 154. 1. 51. 2018. http://dx.doi.org/10.1016/j.ijantimicag.2017.09.006 . 10.1016/j.ijantimicag.2017.09.006 . published International Journal of Antimicrobial Agents
Uncommon carbapenemase-encoding plasmids in the clinically emergent Acinetobacter pittii
Silva, Liliana; Mourão, Joana; Grosso, Filipa; Peixe, Luísa, Journal of Antimicrobial Chemotherapy. 52 - 56. 1. 73. 2017. http://dx.doi.org/10.1093/jac/dkx364 . 10.1093/jac/dkx364 . published Journal of Antimicrobial Chemotherapy
High occurrence and unusual serotype diversity of non-typhoidal Salmonella in non-clinical niches, Angola
Antunes, Patrícia; Campos, Joana; Mourão, Joana; Ribeiro, Teresa G.; Novais, Carla; Peixe, Luísa Vieira, Epidemiology and Infection. 883 - 886. 5. 145. 2017. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000398969700005&KeyUID=WOS:000398969700005 . 10.1017/S095026881600296X . published Epidemiology and Infection
Tolerance to multiple metal stressors in emerging non-typhoidal MDR Salmonella serotypes: a relevant role for copper in anaerobic conditions
Mourão, Joana; Marçal, Sara; Ramos, Paula; Campos, Joana; Machado, Jorge; Peixe, Luísa; Novais, Carla; Antunes, Patrícia, Journal of Antimicrobial Chemotherapy. 2147 - 2157. 8. 71. 2016. http://dx.doi.org/10.1093/jac/dkw120 . 10.1093/jac/dkw120 . published Journal of Antimicrobial Chemotherapy
Salmonellosis: the role of poultry meat
Antunes, Patrícia; Mourão, Joana; Campos, Joana; Peixe, Luísa Vieira, Clinical Microbiology and Infection. 110 - 121. 2. 22. 2016. http://dx.doi.org/10.1016/j.cmi.2015.12.004 . 10.1016/j.cmi.2015.12.004 . published Clinical Microbiology and Infection
Relevance of tcrYAZB operon acquisition for Enterococcus survival at high copper concentrations under anaerobic conditions
Mourão, Joana; Rae, Jennifer; Silveira, Eduarda; Freitas, Ana R.; Coque, Teresa M.; Peixe, Luísa; Antunes, Patrícia; Novais, Carla, Journal of Antimicrobial Chemotherapy. 560 - 563. 2. 71. 2015. http://dx.doi.org/10.1093/jac/dkv330 . 10.1093/jac/dkv330 . published Journal of Antimicrobial Chemotherapy
A hospital sewage ST17 Enterococcus faecium with a transferable Inc18-like plasmid carrying genes coding for resistance to antibiotics and quaternary ammonium compounds (qacZ)
Silveira, Eduarda; Marques, Patrice; Freitas, Ana Raquel; Mourão, Joana; Coque, Teresa M.; Antunes, Patrícia; Peixe, Luísa; Novais, Carla, Journal of Global Antimicrobial Resistance. 49 - 51. 1. 3. 2015. http://dx.doi.org/10.1016/j.jgar.2014.11.005 . http://dx.doi.org/10.1016/j.jgar.2014.11.005 . published Journal of Global Antimicrobial Resistance
Clinical Salmonella Typhimurium ST34 with metal tolerance genes and an IncHI2 plasmid carrying oqxAB-aac(6')-Ib-cr from Europe
Campos, Joana; Mourão, Joana; Marçal, Sara; Machado, Jorge; Novais, Carla; Peixe, Luísa; Antunes, Patrícia, Journal of Antimicrobial Chemotherapy. 843 - 845. 3. 71. 2015. http://dx.doi.org/10.1093/jac/dkv409 . 10.1093/jac/dkv409 . published Journal of Antimicrobial Chemotherapy
Metal tolerance in emerging clinically relevant multidrug-resistant Salmonella enterica serotype 4,[5],12:i:- clones circulating in Europe
Mourão, Joana; Novais, Carla; Machado, Jorge; Peixe, Luísa; Antunes, Patrícia, International Journal of Antimicrobial Agents. 610 - 616. 6. 45. 2015. http://dx.doi.org/10.1016/j.ijantimicag.2015.01.013 . 10.1016/j.ijantimicag.2015.01.013 . published International Journal of Antimicrobial Agents
Ready-to-eat street-vended food as a potential vehicle of bacterial pathogens and antimicrobial resistance: An exploratory study in Porto region, Portugal
Campos, Joana; Gil, Joana; Mourão, Joana; Peixe, Luísa; Antunes, Patrícia, International Journal of Food Microbiology. 1 - 6. 206. 2015. http://dx.doi.org/10.1016/j.ijfoodmicro.2015.04.016 . 10.1016/j.ijfoodmicro.2015.04.016 . published International Journal of Food Microbiology
Characterization of the emerging clinically-relevant multidrug-resistant Salmonella enterica serotype 4,[5],12:i:- (monophasic variant of S. Typhimurium) clones
Mourão, Joana; Machado, Jorge; Novais, Carla; Antunes, Patrícia; Peixe, Luísa Vieira, European Journal of Clinical Microbiology & Infectious Diseases. 2249 - 2257. 12. 33. 2014. http://dx.doi.org/10.1007/s10096-014-2180-1 . 10.1007/s10096-014-2180-1 . published European Journal of Clinical Microbiology & Infectious Diseases
Salmonella enterica serotype Bovismorbificans, a new host for CTX-M-9
Antunes, Patrícia; Mourão, Joana; Alves, Tatiana; Campos, Joana; Novais, Carla; Novais, Ângela; Peixe, Luísa, International Journal of Antimicrobial Agents. 91 - 93. 1. 41. 2013. http://dx.doi.org/10.1016/j.ijantimicag.2012.09.009 . 10.1016/j.ijantimicag.2012.09.009 . published International Journal of Antimicrobial Agents
Microbiological quality of ready-to-eat salads: An underestimated vehicle of bacteria and clinically relevant antibiotic resistance genes
Campos, Joana; Mourão, Joana; Pestana, Nazaré; Peixe, Luísa; Novais, Carla; Antunes, Patrícia, International Journal of Food Microbiology. 464 - 470. 3. 166. 2013. http://dx.doi.org/10.1016/j.ijfoodmicro.2013.08.005 . 10.1016/j.ijfoodmicro.2013.08.005 . published International Journal of Food Microbiology
Characterization of extended-spectrum beta-lactamases, antimicrobial resistance genes, and plasmid content in Escherichia coli isolates from different sources in Rio de Janeiro, Brazil
Queiroz, Mara L.P.; Antunes, Patrícia; Mourão, Joana; Merquior, Vânia L.C.; Machado, Elisabete; Peixe, Luísa Vieira, Diagnostic Microbiology and Infectious Disease. 91 - 94. 1. 74. 2012. http://dx.doi.org/10.1016/j.diagmicrobio.2012.05.019 . 10.1016/j.diagmicrobio.2012.05.019 . published Diagnostic Microbiology and Infectious Disease
Leakage of emerging clinically relevant multidrug-resistant Salmonella clones from pig farms
Antunes, Patrícia; Mourão, Joana; Pestana, Nazaré; Peixe, Luísa Vieira, Journal of Antimicrobial Chemotherapy. 2028 - 2032. 9. 66. 2011. http://dx.doi.org/10.1093/jac/dkr228 . 10.1093/jac/dkr228 . published Journal of Antimicrobial Chemotherapy
First description of qnrS1-IncN plasmid in a ST11 Salmonella Enteritidis clinical isolate from Portugal
Antunes, Patrícia; Mourão, Joana; Machado, Jorge; Peixe, Luísa, Diagnostic Microbiology and Infectious Disease. 463 - 465. 4. 69. 2011. http://dx.doi.org/10.1016/j.diagmicrobio.2010.11.004 . 10.1016/j.diagmicrobio.2010.11.004 . published Diagnostic Microbiology and Infectious Disease
5 34 out of 34 Publications
All projects
Information of exclusive responsibility of the researcher 22-12-2024 , from platform CIÊNCIAVITAE.
2022/09/01 - 2024/03/31
Center for Innovative Biomedicine and Biotechnology - Associate Laboratory
LA/P/0058/2020
Universidade de Coimbra
Funders: Fundação para a Ciência e a Tecnologia
2022/09/01 - 2024/03/31
Next-generation computational tools to exploit soil and marine microorganisms as a valuable source of new antimicrobial compounds against multidrug-resistant bacteria
2021.03416.CEECIND/CP1656/CT0010
Principal investigator
Universidade de Coimbra
Funders: Fundação para a Ciência e a Tecnologia
2021/01/06 - 2021/08/31
Targeting the transporters of cationic amino acids for cancer radiotheranostics: experimental and computational chemistry approach
PTDC/QUI-NUC/30147/2017
Post-doc
Associação do Instituto Superior Técnico para a Investigação e Desenvolvimento; Universidade de Coimbra Centro de Neurociências e Biologia Celular
Funders: Fundação para a Ciência e a Tecnologia
2021/01/06 - 2021/09/02
Membrane proteins - development of new computational approaches and its application to G-Protein Coupled Receptors
PTDC/QUI-OUT/32243/2017
Post-doc
Associação do Instituto Superior Técnico para a Investigação e Desenvolvimento; Universidade de Coimbra Centro de Neurociências e Biologia Celular; Universiteit Utrecht; Weill Cornell Medicine Department of Physiology and Biophysics
Funders: Fundação para a Ciência e a Tecnologia
2018/12/17 - 2021/12/14
CRADLE - Deep learning in cancer drug discovery: a pipeline for the generation of new therapies
POCI-01-0145-FEDER-03135
Post-doc
Instituto de Engenharia de Sistemas e Computadores Tecnologia e Ciência Center for Research in Advanced Computing Systems; Centro de Inovação em Biomedicina e Biotecnologia (CIBB); Universiteit Utrecht; Weill Cornell Medicine Department of Physiology and Biophysics
Funders: Fundação para a Ciência e a Tecnologia; Associação para a Inovação e Desenvolvimento da FCT
2018/03/02 - 2019/03/02
Evaluation of production or processing control practices on the microbiological quality and safety of poultry meat with focus on Salmonella
PP-IJUP2017-SOJA DE PORTUGAL
Post-doc
Universidade do Porto Faculdade de Farmácia; REQUIMTE Unidade de Ciências Biomoleculares Aplicadas; Soja de Portugal
Funders: Soja de Portugal; Universidade do Porto
2017/01/01 - 2017/12/31
Copper tolerance in Enterococcus faecium: unveiling the activity of a multicopper oxidase encoded by cueO gene and its gene transfer to Staphylococcus aureus
NA
Post-doc
Universidade do Porto Faculdade de Farmácia; REQUIMTE Unidade de Ciências Biomoleculares Aplicadas
Funders: REQUIMTE Unidade de Ciências Biomoleculares Aplicadas
2016/06/01 - 2018/12/15
FOODnanoHEALTH-Qualidade e Segurança Alimentar-uma abordagem nano(tecnológica)
NORTE-01-0145-FEDER-000011
Post-doc
Universidade do Porto Faculdade de Farmácia; REQUIMTE Unidade de Ciências Biomoleculares Aplicadas
Funders: Comissao de Coordenacao e Desenvolvimento Regional do Norte
2014/09/08 - 2016/09/08
Discrimination of Salmonella non-typhoid high-risk clones by highthroughput spectroscopic techniques (MALDI-TOF and FTIR-ATR)
EFWISG Research Grant #8168
Researcher
Universidade do Porto Faculdade de Farmácia; REQUIMTE Unidade de Ciências Biomoleculares Aplicadas
Funders: European Society of Clinical Microbiology and Infectious Diseases
2013/01/01 - 2013/12/31
Resistance to biocides in Salmonella from Portugal: a multilayered approach
PP_IJUP2011 #80
PhD Student Fellow
Universidade do Porto Faculdade de Farmácia; REQUIMTE Unidade de Ciências Biomoleculares Aplicadas
Funders: Banco Santander Totta; Universidade do Porto
2012/01/01 - 2016/01/01
Contribution of Biocides to the Selection of Salmonella Non-Typhoid Resistant to Antibiotics: A Multilayered Approach
SFRH/BD/77518/2011/PT
PhD Student Fellow
Universidade do Porto Faculdade de Farmácia; REQUIMTE Unidade de Ciências Biomoleculares Aplicadas
Funders: Fundação para a Ciência e a Tecnologia
2012/01/01 - 2012/12/31
Tracking antibiotic resistance along the Silk Road
PP_IJUP2010 #199
Researcher
Universidade do Porto Faculdade de Farmácia; REQUIMTE Unidade de Ciências Biomoleculares Aplicadas
Funders: Banco Santander Totta; Universidade do Porto
2012/01/01 - 2012/12/31
Molecular and phenotypic characteristics of the emerging Salmonella enterica serotype 4,5,12:i- (monophasic variant of S. Typhimurium) from Portugal
PP_IJUP2010 #17
Researcher
Universidade do Porto Faculdade de Farmácia; REQUIMTE Unidade de Ciências Biomoleculares Aplicadas
Funders: Banco Santander Totta; Universidade do Porto
2011/01/01 - 2011/12/31
Are ready-to-eat salads an important vehicle of pathogenic and commensal bacteria resistant to antibiotics?
PP_IJUP2009_Aqua
Researcher
Universidade do Porto Faculdade de Farmácia; REQUIMTE Unidade de Ciências Biomoleculares Aplicadas
Funders: Banco Santander Totta; Universidade do Porto
2011/01/01 - 2012/12/31
Strategic Project - LA 6 - 2011-2012
PEst-C/EQB/LA0006/2011
Universidade NOVA de Lisboa Faculdade de Ciências e Tecnologia; Universidade do Porto Instituto de Ciências Tecnologias e Agroambiente; Rede de Química e Tecnologia Laboratório Associado para a Química Verde
Funders: Fundação para a Ciência e a Tecnologia
2011/01/01 - 2011/12/31
Population Structure of Salmonella nontyphoidal causing human infections by Multilocus Sequence Typing
PP_IJUP2009_Sal
Researcher
Universidade do Porto Faculdade de Farmácia; REQUIMTE Unidade de Ciências Biomoleculares Aplicadas
Funders: Banco Santander Totta; Universidade do Porto
2010/06/14 - 2013/06/13
Is aquaculture raising more than fish? Detecting antimicrobial resistance in an understudied ecological niche
PTDC/AAC-AMB/103386/2008
Researcher
Universidade do Porto Faculdade de Farmácia; REQUIMTE Unidade de Ciências Biomoleculares Aplicadas; Hospital Universitario Ramón y Cajal Servicio de Microbiología; Universidade de Coimbra
Funders: Fundação para a Ciência e a Tecnologia
5 17 out of 17 projects
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