Neuroscience and Disease

Fly Coimbra Lab (FlyCab): Cell Biology of Neuronal Ageing

Intracellular trafficking

Neuronal disorders & Ageing

Drosophila

Mitochondria

Live microscopy


Research lines

Regulation of intracellular trafficking during neuronal ageing and neurodegeneration

Membrane contact sites organisation during neuronal ageing and neurodegeneration

CRISPR/Cas9 genetic screens in Drosophila to study developmental and ageing trajectories

Overview

The work of my research group explores the complexity of neuronal biology, focusing on understanding how intracellular trafficking influences neuronal function, and its role in healthy aging and neurodegeneration.
We combine in vivo studies in Drosophila melanogaster with cultured mammalian neurons, coupled to advanced microscopy approaches, behavioural assays, and tool development. We also wish to interrogate the fly genome to find potential new determinants of organismal fitness. We hope our work will offer novel insights into avenues of intervention for age-related and neurodegenerative conditions by contributing significantly to our understanding of neuronal biology.
For more information, please visit the lab website www.vagnonilab.com 

Publications

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Information about journal articles, updated at 12-04-2026, from platform CIÊNCIAVITAE.

A SPLICS reporter reveals alpha-synuclein regulation of lysosome-mitochondria contacts which affects TFEB nuclear translocation

Giamogante, Flavia; Barazzuol, Lucia; Maiorca, Francesca; Poggio, Elena; Esposito, Alessandra; Masato, Anna; Napolitano, Gennaro; et al, 2024. Nature Communications. 1. 15. 2024. http://dx.doi.org/10.1038/s41467-024-46007-2 . 10.1038/s41467-024-46007-2 . Nature Communications

Yeast NDI1 reconfigures neuronal metabolism and prevents the unfolded protein response in mitochondrial complex I deficiency

Lucy Granat; Daniel Ranson; Debbra Knorr; Emma Hamer; Ram Prosad Chakrabarty; Francesca Mattedi; Laura Fort-Aznar; et al, 2023. PLoS genetics. 7. 19. 2023. https://kclpure.kcl.ac.uk/portal/en/publications/e56f87c3-f1df-4c21-9777-93ff9290ee08 . https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1010793 . PLoS genetics

Live Imaging of Mitochondria in the Intact Fly Wing

Francesca Mattedi; Daniel C Maddison; Gaynor Ann Smith; Alessio Vagnoni, 2023. Cold Spring Harbor protocols. 106 - 112. 2. 2023. 2023. https://kclpure.kcl.ac.uk/portal/en/publications/395cb895-70d8-4030-ae2d-2f0b6ffe1f36 . 10.1101/pdb.prot108052 . Cold Spring Harbor protocols

Optogenetic cleavage of the Miro GTPase reveals the direct consequences of real-time loss of function in Drosophila.

Mattedi F; Lloyd-Morris E; Hirth F; Alessio Vagnoni, 2023. PLoS biology. 2023. https://europepmc.org/articles/PMC10465005 . 10.1371/journal.pbio.3002273 . PLoS biology

Detailed imaging of mitochondrial transport and precise manipulation of mitochondrial function with genetically-encoded photosensitizers in adult Drosophila neurons

Alessio Vagnoni; Francesca Mattedi; George Chennell, 2022. Methods in Molecular Biology. 2022. https://kclpure.kcl.ac.uk/portal/en/publications/db7b9b0a-5a10-4850-ac42-b4581948757d . https://doi.org/10.1007/978-1-0716-1990-2_20 . Methods in Molecular Biology

Clonal Imaging of Mitochondria in the Dissected Fly Wing

Daniel C Maddison; Francesca Mattedi; Alessio Vagnoni; Gaynor Ann Smith, 2022. Cold Spring Harbor protocols. 10.1101/pdb.prot1080 - 10.1101/pdb.prot1080. 2022. https://kclpure.kcl.ac.uk/portal/en/publications/157d758a-dbfd-4627-a162-af43d8d565d3 . 10.1101/pdb.prot108051 . Cold Spring Harbor protocols

Decreasing pdzd8-mediated mito-ER contacts improves organismal fitness and mitigates Aß42 toxicity

Victoria L. Hewitt; Leonor Miller-Fleming; Madeleine J. Twyning; Simonetta Andreazza; Francesca Mattedi; Julien Prudent; Franck Polleux; Alessio Vagnoni; Alexander J. Whitworth, 2022. Life Science Alliance. 11. 5. 2022. https://kclpure.kcl.ac.uk/portal/en/publications/061bca72-7653-4ca8-ab50-a29ca8a89ebd . 10.26508/lsa.202201531 . Life Science Alliance

High-resolution imaging of mitochondria and mitochondrial nucleoids in differentiated SH-SY5Y cells

Alessio Vagnoni; Emily Annuario; Kristal Ng, 2022. Methods in Molecular Biology. 2022. https://kclpure.kcl.ac.uk/portal/en/publications/ca005c0e-a0f6-4d8f-b8f2-7285adf6311e . https://doi.org/10.1007/978-1-0716-1990-2_15 . Methods in Molecular Biology

Analysis of Mitochondrial Dynamics in Adult

Daniel C Maddison; Francesca Mattedi; Alessio Vagnoni; Gaynor Ann Smith, 2022. Cold Spring Harbor protocols. 2022. https://kclpure.kcl.ac.uk/portal/en/publications/d26c7c3c-0dbf-4381-839b-385325735fdb . 10.1101/pdb.top107819 . Cold Spring Harbor protocols

LMTK2 binds to kinesin light chains to mediate anterograde axonal transport of cdk5/p35 and LMTK2 levels are reduced in Alzheimer's disease brains

Mórotz, G.M.; Glennon, E.B.; Gomez-Suaga, P.; Lau, D.H.W.; Robinson, E.D.; Sedlák, É.; Vagnoni, A.; Noble, W.; Miller, C.C.J., 2019. Acta neuropathologica communications. 73 - 73. 1. 7. 2019. http://www.scopus.com/inward/record.url?eid=2-s2.0-85065767031&partnerID=MN8TOARS . 10.1186/s40478-019-0715-5 . Acta neuropathologica communications

Temporal Control of Axonal Transport: The Extreme Case of Organismal Ageing

Mattedi, F.; Vagnoni, A., 2019. Frontiers in Cellular Neuroscience. 13. 2019. http://www.scopus.com/inward/record.url?eid=2-s2.0-85072726742&partnerID=MN8TOARS . 10.3389/fncel.2019.00393 . Frontiers in Cellular Neuroscience

Kinesin light chain-1 serine-460 phosphorylation is altered in Alzheimer's disease and regulates axonal transport and processing of the amyloid precursor protein

Gábor M. Mórotz; Elizabeth Glennon; Jenny Greig; Dawn H.W. Lau; Nishita Bhembre; Francesca Mattedi; Nadine Muschalik; et al, 2019. Acta Neuropathologica Communications. 1. 7. 2019. https://kclpure.kcl.ac.uk/portal/en/publications/0c203dbd-a636-4d1d-8e1c-44d785dd0c1a . 10.1186/s40478-019-0857-5 . Acta Neuropathologica Communications

A cAMP/PKA/Kinesin-1 Axis Promotes the Axonal Transport of Mitochondria in Aging Drosophila Neurons

Alessio Vagnoni; Simon L. Bullock, 2018. Current Biology. 2018. https://kclpure.kcl.ac.uk/portal/en/publications/8b022c26-5c06-4a9e-813a-3e0fd14bc5a3 . 10.1016/j.cub.2018.02.048 . Current Biology

Methodological advances in imaging intravital axonal transport [version 1; referees: 3 approved]

James N. Sleigh; Alessio Vagnoni; Alison E. Twelvetrees; Giampietro Schiavo, 2017. 2017. https://f1000research.com/articles/6-200/v1 . 10.12688/f1000research.10433.1 .

Reducing Lissencephaly-1 levels augments mitochondrial transport and has a protective effect in adult Drosophila neurons

Vagnoni, A.; Hoffmann, P.C.; Bullock, S.L., 2016. Journal of Cell Science. 178 - 190. 1. 129. 2016. http://www.scopus.com/inward/record.url?eid=2-s2.0-84959017047&partnerID=MN8TOARS . 10.1242/jcs.179184 . Journal of Cell Science

A simple method for imaging axonal transport in aging neurons using the adult Drosophila wing

Vagnoni, A.; Bullock, S.L., 2016. Nature Protocols. 1711 - 1723. 9. 11. 2016. http://www.scopus.com/inward/record.url?eid=2-s2.0-85015187726&partnerID=MN8TOARS . 10.1038/nprot.2016.112 . Nature Protocols

Loss of c-Jun N-terminal kinase-interacting protein-1 does not affect axonal transport of the amyloid precursor protein or Aß production

Vagnoni, A.; Glennon, E.B.C.; Perkinton, M.S.; Gray, E.H.; Noble, W.; Miller, C.C.J., 2013. Human Molecular Genetics. 4646 - 4652. 22. 22. 2013. http://www.scopus.com/inward/record.url?eid=2-s2.0-84887005627&partnerID=MN8TOARS . 10.1093/hmg/ddt313 . Human Molecular Genetics

Lemur tyrosine kinase-2 signalling regulates kinesin-1 light chain-2 phosphorylation and binding of Smad2 cargo

Manser, C.; Guillot, F.; Vagnoni, A.; Davies, J.; Lau, K.-F.; McLoughlin, D.M.; De Vos, K.J.; Miller, C.C.J., 2012. Oncogene. 2773 - 2782. 22. 31. 2012. http://www.scopus.com/inward/record.url?eid=2-s2.0-84859607330&partnerID=MN8TOARS . 10.1038/onc.2011.437 . Oncogene

Amyotrophic lateral sclerosis-associated mutant VAPBP56s perturbs calcium homeostasis to disrupt axonal transport of mitochondria

Mórotz, G.M.; De Vos, K.J.; Vagnoni, A.; Ackerley, S.; Shaw, C.E.; Miller, C.C.J., 2012. Human Molecular Genetics. 1979 - 1988. 9. 21. 2012. http://www.scopus.com/inward/record.url?eid=2-s2.0-84859246580&partnerID=MN8TOARS . 10.1093/hmg/dds011 . Human Molecular Genetics

Cdk5/p35 phosphorylates lemur tyrosine kinase-2 to regulate protein phosphatase-1C phosphorylation and activity

Manser, C.; Vagnoni, A.; Guillot, F.; Davies, J.; Miller, C.C.J., 2012. Journal of Neurochemistry. 343 - 348. 3. 121. 2012. http://www.scopus.com/inward/record.url?eid=2-s2.0-84859597153&partnerID=MN8TOARS . 10.1111/j.1471-4159.2012.07650.x . Journal of Neurochemistry

Calsyntenin-1 mediates axonal transport of the amyloid precursor protein and regulates aß production

Vagnoni, A.; Perkinton, M.S.; Gray, E.H.; Francis, P.T.; Noble, W.; Miller, C.C.J., 2012. Human Molecular Genetics. 2845 - 2854. 13. 21. 2012. http://www.scopus.com/inward/record.url?eid=2-s2.0-84863518335&partnerID=MN8TOARS . 10.1093/hmg/dds109 . Human Molecular Genetics

Phosphorylation of kinesin light chain 1 at serine 460 modulates binding and trafficking of calsyntenin-1

Vagnoni, A.; Rodriguez, L.; Manser, C.; De Vos, K.J.; Miller, C.C., 2011. Journal of Cell Science. 1032 - 1042. 7. 124. 2011. http://www.scopus.com/inward/record.url?eid=2-s2.0-79953141458&partnerID=MN8TOARS . 10.1242/jcs.075168 . Journal of Cell Science

Riluzole protects against glutamate-induced slowing of neurofilament axonal transport

Stevenson, A.; Yates, D.M.; Manser, C.; De Vos, K.J.; Vagnoni, A.; Leigh, P.N.; McLoughlin, D.M.; Miller, C.C.J., 2009. Neuroscience Letters. 161 - 164. 2. 454. 2009. http://www.scopus.com/inward/record.url?eid=2-s2.0-62949103631&partnerID=MN8TOARS . 10.1016/j.neulet.2009.02.061 . Neuroscience Letters

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